重瓣榆叶梅全叶绿体基因组遗传特征分析

段春燕; 王晓凌; 段春燕; 王晓凌

doi:10.11833/j.issn.2095-0756.20230489

[1]

俞德浚, 陆玲娣, 谷粹芝, 等. 中国植物志: 第38卷[M]. 北京: 科学出版社, 1986.

YU Dejun, LU Lingdi, GU Cuizhi, et al. Flora of China: Volume 38 [M]. Beijing: Science Press, 1986.

[2]

董山平, 罗乐, 钟军珺, 等. 榆叶梅及其部分近缘种的染色体核型分析[J]. 西北植物学报, 2015, 35(3): 608 − 613.

DONG Shanping, LUO Le, ZHONG Junjun, et al. Analysis of karyotypes of Prunus triloba and four related species [J]. Acta Botanica Boreali-Occidentalia Sinica, 2015, 35(3): 608 − 613.

[3]

DUAN Chunyan, SHEN Yehua, ZHAO Guifang. Complete chloroplast genome characteristics of Prunus triloba Lindl [J]. Mitochond DNA Part B Resources, 2020, 5(1): 504 − 505.

[4]

李姣姣, 陈媛梅. 重瓣榆叶梅花中多糖提取工艺及动态含量研究[J]. 中国农业大学学报, 2018, 23(1): 71 − 79.

LI Jiaojiao, CHEN Yuanmei. Optimal extraction technology and the dynamic content of polysaccharide in Amygdalus triloba f. multiplex flowers [J]. Journal of China Agricultural University, 2018, 23(1): 71 − 79.

[5]

徐毅励, 陈媛梅. 重瓣榆叶梅花中蛋白质提取工艺及动态含量研究[J]. 西北林学院学报, 2015, 30(3): 191 − 196.

XU Yili, CHEN Yuanmei. Optimal extraction technology and dynamic content of protein in the flower of Amygdalus triloba f. multiplex [J]. Journal of Northwest Forestry University, 2015, 30(3): 191 − 196.

[6]

周保昌, 贺斌, 李烨, 等. 经典名方中郁李仁的本草考证[J]. 中国实验方剂学杂志, 2023, 29(11): 1 − 11.

ZHOU Baochang, HE Bin, LI Ye, et al. Herbal textual research on pruni semen in famous classical formulas [J]. Chinese Journal of Experimental Traditional Medical Formulae, 2023, 29(11): 1 − 11.

[7]

张强英, 张启翔, 程堂仁. 榆叶梅野生群体表型多样性的研究[J]. 中南林业科技大学学报, 2012, 32(5): 155 − 160.

ZHANG Qiangying, ZHANG Qixiang, CHENG Tangren. Study on phenotypic diversity of Prunus triloba wild populations [J]. Journal of Central South University of Forestry &Technology, 2012, 32(5): 155 − 160.

[8]

洪森荣, 张牧彤, 徐子林, 等. ‘怀玉山’高山马铃薯叶绿体基因组特征及密码子使用偏好性分析[J]. 浙江农林大学学报, 2024, 41(1): 92 − 103.

HONG Senrong, ZHANG Mutong, XU Zilin, et al. Chloroplast genome characteristics and codon usage preference of Solanum tuberosum var. cormosus ‘Huaiyushan’ [J]. Journal of Zhejiang A&F University, 2024, 41(1): 92 − 103.

[9]

赵祺, 余佳兴, 秦宇雯, 等. 基于高通量测序的菜头肾叶绿体基因组的组装及序列分析[J]. 中草药, 2021, 52(6): 1744 − 1750.

ZHAO Qi, YU Jiaxing, QIN Yuwen, et al. Assembly and sequence analysis of chloroplast genome of Championella sarcorrhiza based on high-throughput sequencing [J]. Chinese Traditional and Herbal Drugs, 2021, 52(6): 1744 − 1750.

[10]

钱方, 高作敏, 胡利娟, 等. 海甘蓝(Crambe abyssinica)叶绿体基因组特征及其系统发育研究[J]. 生物技术通报, 2022, 38(6): 174 − 186.

QIAN Fang, GAO Zuomin, HU Lijuan, et al. Characteristics of Crambe abyssinica chloroplast genome and its phylogenetic relationship in Brassicaceae [J]. Biotechnology Bulletin, 2022, 38(6): 174 − 186.

[11]

龚意辉, 周桂花, 李丽梅, 等. 黄桃叶绿体基因组的组装与序列分析[J]. 热带作物学报, 2022, 43(8): 1545 − 1553.

GONG Yihui, ZHOU Guihua, LI Limei, et al. Assembly and sequence analysis of chloroplast genome of Amygdalus persica [J]. Chinese Journal of Tropical Crops, 2022, 43(8): 1545 − 1553.

[12]

刘静, 张海琴, 凡星, 等. 基于叶绿体atpB-rbcL序列探讨猬草属和赖草属植物的系统发育和母系起源[J]. 草业学报, 2012, 21(5): 77 − 85.

LIU Jing, ZHANG Haiqin, FAN Xing, et al. Phylogenetic relationships and maternal donor of Hystrix and Leymus species as revealed by chloroplast at atpB-rbcL sequence [J]. Acta Prataculturae Sinica, 2012, 21(5): 77 − 85.

[13]

LI Qiujie, SU Na, ZHANG Ling, et al. Chloroplast genomes elucidate diversity, phylogeny, and taxonomy of Pulsatilla (Ranunculaceae) [J/OL]. Scientific reports, 2020, 10(1): 19781[2023-08-20]. doi: 10.1038/s41598-020-76699-7.

[14]

许冰清, 安苗苗, 姜可以, 等. 花叶矢竹叶绿体psbD基因的克隆与功能分析[J]. 浙江农林大学学报, 2015, 32(4): 557 − 565.

XU Bingqing, AN Miaomiao, JIANG Keyi, et al. Cloning and functional analysis of the chloroplast psbD gene of Phyllostachys japonicus [J]. Journal of Zhejiang A&F University, 2015, 32(4): 557 − 565.

[15]

闫玖英, 马长青, 常博, 等. 改良CTAB 法用于苹果果实基因组DNA的提取[J]. 分子植物育种, 2017, 15(9): 3610 − 3615.

YAN Jiuying, MA Changqing, CHANG Bo, et al. A modified CTAB method for genomic DNA extraction from apple fruit [J]. Molecular Plant Breeding, 2017, 15(9): 3610 − 3615.

[16]

BANKEVICH A, NURK S, ANTIPOV D, et al. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing [J]. Journal of Computational Biology, 2012, 19(5): 455 − 477.

[17]

WYMAN S K, JANSEN R K, BOORE J L. Automatic annotation of organellar genomes with DOGMA [J]. Bioinformatics, 2004, 20(17): 3252 − 3255.

[18]

LIU Chang, SHI Linchun, ZHU Yingjie, et al. CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences [J/OL]. BMC Genomics, 2012, 13: 715[2023-08-25]. doi:10.1186/1471-2164-13-715.

[19]

BEIER S, THIEL T, MNCH T, et al. MISA-web: a web server for microsatellite prediction [J]. Bioinformatics, 2017, 33(16): 2853 − 2858.

[20]

KATOH K, STANDLEY D M. MAFFT multiple sequence alignment software version 7: improvements in performance and usability [J]. Molecular Biology and Evolution, 2013, 30(4): 772 − 780.

[21]

富贵, 刘晶, 李军乔. 密花香薷叶绿体基因组结构及系统进化分析[J]. 中草药, 2022, 53(6): 1844 − 1853.

FU Gui, LIU Jing, LI Junqiao. Characterization of chloroplast genome structure and phyletic evolution of Elsholtzia densa [J]. Chinese Traditional and Herbal Drugs, 2022, 53(6): 1844 − 1853.

[22]

黄琼林. 高良姜叶绿体基因组测序与特征分析[J]. 热带作物学报, 2021, 42(1): 1 − 6.

HUANG Qionglin. Complete sequencing and analysis of chloroplast genome from Alpinia officinarum Hance [J]. Chinese Journal of Tropical Crops, 2021, 42(1): 1 − 6.

[23]

SHI Cao, LIU Yuan, HUANG Hui, et al. Contradiction between plastid gene transcription and function due to complex post transcriptional splicing: an exemplary study of ycf15 function and evolution in angiosperms [J/OL]. PLoS One, 2013, 8(3): e59620[2023-08-25]. doi: 10.1371/journal.pone.0059620.

[24]

段春燕, 张凯, 段义忠. 长柄扁桃叶绿体基因组比较[J]. 生物工程学报, 2020, 36(12): 2850 − 2859.

DUAN Chunyan, ZHANG Kai, DUAN Yizhong. Comparison of complete chloroplast genome sequences of Amygdalus pedunculata Pall [J]. Chinese Journal of Biotechnology, 2020, 36(12): 2850 − 2859.

[25]

赵一之. 关于榆叶梅的系统位置[J]. 内蒙古大学学报(自然科学版), 1996, 27(1): 70 − 71.

ZHAO Yizhi. On systematic position of Cerasus triloba, [J]. Journal of Inner Mongolia University Natural Science Edition, 1996, 27(1): 70 − 71.

[26]

WANG Li, GUO Zhihong, SHANG Qianhan, et al. The complete chloroplast genome of Prunus triloba var. plena and comparative analysis of Prunus species: genome structure, sequence divergence, and phylogenetic analysis [J]. Brazilian Journal of Botany, 2021, 44: 85 − 95.