[1] |
周涛, 杨林, 舒军霞, 等. 3种含笑属植物叶绿体基因组密码子偏好性分析[J]. 西部林业科学, 2022, 51(3): 91 − 100.
ZHOU Tao, YANG Lin, SHU Junxia, et al. Analysis of codon bias in the chloroplast genome of three of Michelia spp. species [J]. Journal of West China Forestry Science, 2022, 51(3): 91 − 100. |
[2] |
ANDARGIE M, ZHU Congyi. Genome-wide analysis of codon usage in sesame (Sesamum indicum L. ) [J/OL]. Heliyon, 2022, 8(1): e8687[2023-09-08]. doi: 10.1016/j.heliyon.2021.e08687. |
[3] |
孟祎, 李菁, 杜少兵, 等. 17种鼠李科植物的叶绿体基因组特征和密码子偏好性分析[J/OL]. 分子植物育种, 2023-08-22[2023-09-08]. https://link.cnki.net/urlid/46.1068.S.20230822.1011.002.
MENG Yi, LI Jing, DU Shaobing, et al. Analysis of chloroplast genome characteristics and codon preference of 17 species of Rhamnaceae [J/OL]. Molecular Plant Breeding, 2023-08-22[2023-09-08]. https://link.cnki.net/urlid/46.1068.S.20230822.1011.002. |
[4] |
辛雅萱, 黎若竹, 李鑫, 等. 杧果叶绿体基因组密码子使用偏好性分析[J]. 中南林业科技大学学报, 2021, 41(9): 148 − 156, 165.
XIN Yaxuan, LI Ruozhu, LI Xin, et al. Analysis on codon usage bias of chloroplast genome in Mangifera indica [J]. Journal of Central South University of Forestry &Technology, 2021, 41(9): 148 − 156, 165. |
[5] |
PARVATHY S T, UDAYASURIYAN V, BHADANA V. Codon usage bias [J]. Molecular Biology Reports, 2022, 49(1): 539 − 565. |
[6] |
CHAKRABORTY S, YENGKHOM S, UDDIN A. Analysis of codon usage bias of chloroplast genes in Oryza species [J/OL]. Planta, 2020, 252(4): 67[2023-09-08]. doi: 10.1007/s00425-020-03470-7. |
[7] |
LI Changle, ZHOU Ling, NIE Jiangbo, et al. Codon usage bias and genetic diversity in chloroplast genomes of Elaeagnus species (Myrtiflorae: Elaeagnaceae) [J]. Physiology and Molecular Biology of Plants, 2023, 29(2): 239 − 251. |
[8] |
WU Peng, XIAO Wenqi, LUO Yingyong, et al. Comprehensive analysis of codon bias in 13 Ganoderma mitochondrial genomes [J/OL]. Frontiers in Microbiology, 2023, 14: 1170790[2023-09-08]. doi: 10.3389/fmicb.2023.1170790. |
[9] |
GENG Xiaoshan, HUANG Ning, ZHU Yuling, et al. Codon usage bias analysis of the chloroplast genome of cassava [J]. South African Journal of Botany, 2022, 151: 970 − 975. |
[10] |
王身昌, 胡尚连, 曹颖, 等. 梁山慈竹高通量转录组测序及差异表达基因分析[J]. 华北农学报, 2016, 31(3): 65 − 71.
WANG Shenchang, HU Shanglian, CAO Ying, et al. High-throughput RNA-seg and analysis on differential expressed gene from Dendrocalamus farinosus [J]. Acta Agriculturae Boreali-Sinica, 2016, 31(3): 65 − 71. |
[11] |
姜霞, 周华, 晏玉莹, 等. 梁山慈竹和硬头黄竹秆形结构和地上生物量分配特性[J]. 贵州林业科技, 2023, 51(1): 39 − 43.
JIANG Xia, ZHOU Hua, YAN Yuying, et al. Culm structure and above-ground biomass allocation of Dendrocalamus farinosus and Bambusa rigida [J]. Guizhou Forestry Science and Technology, 2023, 51(1): 39 − 43. |
[12] |
JIANG Yue, DENG Fei, WANG Hualin, et al. An extenxive analysis on the global codon usage pattern of baculoviruses [J]. Archives of Virology, 2008, 153(12): 2273 − 2282. |
[13] |
原晓龙, 王毅, 张劲峰. 灰毛浆果楝叶绿体基因组密码子使用特征分析[J]. 森林与环境学报, 2020, 40(2): 195 − 202.
YUAN Xiaolong, WANG Yi, ZHANG Jinfeng. Characterization of codon usage in Cipadessa cinerascens chloroplast genome [J]. Journal of Forest and Environment, 2020, 40(2): 195 − 202. |
[14] |
MAZUMDER G A, UDDIN A, CHAKRABORTY S. Analysis of codon usage bias in mitochondrial CO gene among platyhelminthes [J/OL]. Molecular & Biochemical Parasitology, 2021, 245: 111410[2023-09-08]. doi: 10.1016/j.molbiopara.2021.111410. |
[15] |
秦政, 郑永杰, 桂丽静, 等. 樟树叶绿体基因组密码子偏好性分析[J]. 广西植物, 2018, 38(10): 1346 − 1355.
QIN Zheng, ZHENG Yongjie, GUI Lijing, et al. Codon usage bias analysis of chloroplast genome of camphora tree (Cinnamomum camphora) [J]. Guihaia, 2018, 38(10): 1346 − 1355. |
[16] |
BEGUM N S, CHAKRABORTY S. Influencing elements of codon usage bias in Birnaviridae and its evolutionary analysis [J/OL]. Virus Research, 2022, 310: 198672[2023-09-08]. doi: 10.1016/j.virusres.2021.198672. |
[17] |
唐晓芬, 陈莉, 马玉韬. 密码子使用偏性量化方法研究综述[J]. 基因组学与应用生物学, 2013, 32(5): 660 − 666.
TANG Xiaofen, CHEN Li, MA Yutao. Review and prospect of the principle and methods quantifying codon usage bias [J]. Genomics and Applied Biology, 2013, 32(5): 660 − 666. |
[18] |
陆奇丰, 骆文华. 广西秋海棠叶绿体基因组密码子偏好性分析[J/OL]. 分子植物育种, 2023, 2023-09-05[2023-09-08]. https://link.cnki.net/urlid/46.1068.S.20230905.0920.002.
LU Qifeng, LUO Wenhua. Analysis of codon usage bias in chloroplast genome of Begonia guangxiensis [J/OL]. Molecular Plant Breeding, 2023, 2023-09-05[2023-09-08]. https://link.cnki.net/urlid/46.1068.S.20230905.0920.002. |
[19] |
原晓龙, 李云琴, 张劲峰, 等. 乳油木叶绿体基因组密码子偏好性分析[J]. 分子植物育种, 2020, 18(17): 5658 − 5664.
YUAN Xiaolong, LI Yunqin, ZHANG Jinfeng, et al. Codon usage bias analysis of chloroplast genome in Vitellaria paradoxa [J]. Molecular Plant Breeding, 2020, 18(17): 5658 − 5664. |
[20] |
沈莲文, 田金红, 王玉昌, 等. 2种玉兰属植物叶绿体基因组密码子偏好性分析[J]. 西南林业大学学报(自然科学), 2023, 43(2): 44 − 53.
SHEN Lianwen, TIAN Jinhong, WANG Yuchang, et al. Analysis of codon usage bias (CUB) in the chloroplast genomes of 2 Yulania species [J]. Journal of Southwest Forestry University (Natural Sciences), 2023, 43(2): 44 − 53. |
[21] |
王鹏良, 吴双成, 杨利平, 等. 巨桉叶绿体基因组密码子偏好性分析[J]. 广西植物, 2019, 39(12): 1583 − 1592.
WANG Pengliang, WU Shuangcheng, YANG Liping, et al. Analysis of codon bias of chloroplast genome in Eucalyptus grandis [J]. Guihaia, 2019, 39(12): 1583 − 1592. |
[22] |
胡晓艳, 许艳秋, 韩有志, 等. 酸枣叶绿体基因组密码子使用偏性分析[J]. 森林与环境学报, 2019, 39(6): 621 − 628.
HU Xiaoyan, XU Yanqiu, HAN Youzhi, et al. Codon usage bias analysis of the chloroplast genome of Ziziphus jujuba var. spinosa [J]. Journal of Forest and Environment, 2019, 39(6): 621 − 628. |
[23] |
李江飞, 王瑜, 颜廷雨, 等. 云南油杉叶绿体基因组密码子偏好性分析[J]. 中南林业科技大学学报, 2022, 42(4): 30 − 39.
LI Jiangfei, WANG Yu, YAN Tingyu, et al. Analysis on codon usage bias of Keteleeria evelyniana chloroplast genome [J]. Journal of Central South University of Forestry &Technology, 2022, 42(4): 30 − 39. |
[24] |
刘兴跃, 何仲坚, 邱毅敏. 4种蔷薇科果树叶绿体基因组密码子偏好性分析[J]. 分子植物育种, 2022, 20(16): 5299 − 5308.
LIU Xingyue, HE Zhongjian, QIU Yimin. Analysis of codon bias in the chloroplast genome of four Rosaceae fruit trees [J]. Molecular Plant Breeding, 2022, 20(16): 5299 − 5308. |
[25] |
ZHOU Meng, LONG Wei, LI Xia. Analysis of synonymous codon usage in chloroplast genome of Populus alba [J]. Journal of Forestry Research, 2008, 19(4): 293 − 297. |
[26] |
王占军, 丁亮, 蔡倩文, 等. 3种木薯全基因组的密码子偏好性模式与变异来源比较[J]. 应用与环境生物学报, 2021, 27(4): 1013 − 1021.
WANG Zhanjun, DING Liang, CAI Qianwen, et al. Comparison of codon preference patterns and variation sources in Manihot esculenta Crantz genomes [J]. Chinese Journal of Applied and Environmental, 2021, 27(4): 1013 − 1021. |
[27] |
李江飞, 李亚麒, 唐军荣, 等. 高山松叶绿体基因组密码子偏好性模式[J]. 生物学杂志, 2023, 40(1): 52 − 59.
LI Jiangfei, LI Yaqi, TANG Junrong, et al. Comparison of codon preference patterns in the chloroplast genome of Pinus densata [J]. Journal of Biology, 2023, 40(1): 52 − 59. |
[28] |
李江平, 秦政, 国春策, 等. 抽筒竹叶绿体基因组的密码子偏好性分析[J]. 竹子学报, 2019, 38(2): 79 − 87.
LI Jiangping, QIN Zheng, GUO Chunce, et al. Codon bias in the chloroplast genome of Gelidocalamus tessellatus [J]. Journal of Bamboo Research, 2019, 38(2): 79 − 87. |
[29] |
黄笑宇, 许在恩, 郭小勤. 基于全基因组的毛竹同义密码子使用偏好性分析[J]. 浙江农林大学学报, 2017, 34(1): 120 − 128.
HUANG Xiaoyu, XU Zai’en, GUO Xiaoqin. Synonymous codon bias of Phyllostachys edulis [J]. Journal of Zhejiang A&F University, 2017, 34(1): 120 − 128. |
[30] |
MA Xingliang, ZHU Qinlong, CHEN Yuanling, et al. CRISPRICas9 platforms for genome editing in plants: developments and applications [J]. Molecular Plant, 2016, 9(7): 961 − 974. |