[1] MAMZ B, MÜLLER K, KUCERA B, et al. Water uptake and distribution in germinating tobacco seeds investigated in vivo by nuclear magnetic resonance imaging [J]. Plant Physiology, 2005, 138: 1538 − 1551.
[2] OH E, KANG H, YAMAGUCHI S, et al. Genome-wide analysis of genes targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during seed germination in Arabidopsis [J]. The Plant Cell, 2009, 21: 403 − 419.
[3] OH E, YAMAGUCHI S, HU Jianhong, et al. PIL5, a phytochrome-interacting Bhlh protein, regulates gibberellin responsiveness by binding directly to the GAI and RGA promoters in Arabidopsis seeds [J]. The Plant Cell, 2007, 19: 1192 − 1208.
[4] PARK J, LEE N, KIM W, et al. ABI3 and PIL5 collaboratively activate the expression of SOMNUS by directly binding to its promoter in imbibed Arabidopsis seeds [J]. The Plant Cell, 2011, 23: 1404 − 1415.
[5] SHINOMURA T, NAGATANI A, CHORY J, et al. The induction of seed germination in Arabidopsis thaliana is regulated principally by phytochrome B and secondarily by phytochrome A [J]. Plant Physiology, 1994, 104: 363 − 371.
[6] SHINOMURA T, NAGATANI A, HANZAWA H, et al. Action spectra for phytochrome A- and B-specific photoinduction of seed germination in Arabidopsis thaliana [J]. Proceedings of the National Academy of Sciences of the United States of America, 1996, 93: 8129 − 8133.
[7] APPENROTH K J, LENK G, GOLDAU L, et al. Tomato seed germination: regulation of different response modes by phytochrome B2 and phytochrome A [J]. Plant Cell and Environment, 2006, 29: 701 − 709.
[8] DONG Shuai, LIU Yiling, ZHANG Min, et al. Maternal light environment interacts with genotype in regulating seed photodormancy in tobacco[J/OL]. Environment and Experimental Botany, 2022, 194: 104745[2022-09-07]. doi: 10.1016/j.envexpbot.2021.104745.
[9] BOLGER A M, LOHSE M, USADEL B. Trimmomatic: a flexible trimmer for illumina sequence data [J]. Bioinformatics, 2014, 30(15): 2114 − 2120.
[10] KIM D, LANGMEAD B, SALZBERG S L. HISAT: a fast spliced aligner with low memory requirements [J/OL]. Nature Methods, 2015, 12(4)[2022-09-07]. doi: 10.1038/NMETH.3317.
[11] TRAPNELL C, WILLIAMS B A, PERTEA G, et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation [J]. Nature Biotechnology, 2010, 28(5): 511 − 515.
[12] ROBERTS A, TRAPNELL C, DONAGHEY J, et al. Improving RNA-Seq expression estimates by correcting for fragment bias [J/OL]. Genome Biology, 2011, 12(3): R22[2022-09-07]. http://genomebiology.com/2011/12/3/R22.
[13] LOVE M I, SONESON C, PATRO R. Swimming downstream: statistical analysis of differential transcript usage following salmon quantification [J/OL]. F1000Research, 2018, 7: 952[2022-09-07]. https://f1000research.com/articles/7-952.
[14] WIESE S, REIDEGELD K A, MEYER H E, et al. Protein labeling by ITRAQ: a new tool for quantitative mass spectrometry in proteome research [J]. Proteomics, 2007, 7(3): 340 − 350.
[15] LIVAK K J, SCHMITTGEN T D. Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔCt method [J]. Methods, 2001, 25(4): 402 − 408.
[16] 李振华, 徐如宏, 任明见, 等. 光敏色素感知光温信号调控种子休眠与萌发研究进展[J]. 植物生理学报, 2019, 55(5): 539 − 546.

LI Zhenhua, XU Ruhong, REN Mingjian, et al. Advances in phytochrome regulating seed dormancy and germination by sensing light and temperature signals [J]. Plant Physiology Journal, 2019, 55(5): 539 − 546.
[17] 宋碧清, 郑昀晔, 马文广, 等. 贮藏温度对烟草种子后熟的影响研究[J]. 种子, 2017, 36(4): 77 − 79.

SONG Biqing, ZHENG Yunye, MA Wenguang, et al. Effects of storage temperature on after-ripening of tobacco seed [J]. Seeds, 2017, 36(4): 77 − 79.
[18]

LIU Qiyuan, LI Zhenhua, ZHANG Min, et al. Systematic analysis of photo/sko-regulated germination and post-germination development of shallow photodormant seeds in Nicotiana tabacum L. [J/OL]. Frontiers in Plant Science, 2022, 13: 1042981[2022-09-07]. doi: 10.3389/fpls.2022.1042981.
[19]

de WIT M, GALVÃO V C, FANKHAUSER C. Light-mediated hormonal regulation of plant growth and development [J]. Annual Review of Plant Biology, 2016, 67(1): 513 − 537.
[20] 杨立文, 刘双荣, 林荣呈. 光信号与激素调控种子休眠和萌发研究进展[J]. 植物学报, 2019, 54(5): 569 − 581.

YANG Liwen, LIU Shuangrong, LIN Rongcheng. Advances in light and hormones in regulating seed dormancy and germination [J]. Chinese Bulletin of Botany, 2019, 54(5): 569 − 581.
[21]

ALBAN C, JOB D, DOUCE R. Biotin metabolism in plants [J]. Annual Review of Plant Biology, 2000, 51: 17 − 47.
[22]

VAISTIJ F E, BARROS-GALVÃO T, COLE A F, et al. MOTHER-OF-FT-AND-TFL1 represses seed germination under far-red light by modulating phytohormone responses in Arabidopsis thaliana [J]. Proceedings of the National Academy of Sciences of the United States of America, 2018, 115: 8442 − 8447.
[23]

LEUBNER-METZGER G. Functions and regulation of β-1, 3-glucanase during seed germination, dormancy release and after-ripenning [J]. Seed Science Research, 2003, 13(1): 17 − 34.
[24]

NONOGAKI H, GEE O H, BRADFORD K J. A germination specific endomannanase gene is expressed in the micropylar endosperm cap of tomato seeds [J]. Plant Physiology, 2000, 123(4): 1235 − 1246.