Volume 25 Issue 1
Jun.  2018
Turn off MathJax
Article Contents
Abstract
References
Article Navigation >  Journal of Zhejiang A&F University  > 2008  >  25(1): 104-108

JU Jiao, LI Yingchao, WANG Libing, et al. Coupling effects of soil water and fertilizer application on the growth of Quercus variabilis seedlings[J]. Journal of Zhejiang A&F University, 2020, 37(4): 673-682. DOI: 10.11833/j.issn.2095-0756.20190456
Citation: WU Jia-sheng, WANG Xu-sheng. Methods of bioinformatic analysis for candidate genes underlying quantitative trait loci(QTLs)[J]. Journal of Zhejiang A&F University, 2008, 25(1): 104-108.
shu

Methods of bioinformatic analysis for candidate genes underlying quantitative trait loci(QTLs)

  • 1.

    School of Forestry and Biotechnology, Zhejiang Forestry College, Lin'an 311300, Zhejiang, China;

  • 2.

    Bioinformatics Institute, Zhejiang University, Hangzhou 310029, Zhejiang, China

  • Received Date: 2007-04-20
  • Rev Recd Date: 2007-09-20
  • Publish Date: 2008-02-10
  • Almost all crops have been studied on QTL(quantitative trait loci) mapping with many QTL mapping methods, such as IM(interval mapping), CIM(composite interval mapping), MCIM(mixed-model based composite interval mapping) and Bayesian QTL mapping having been developed. However, these methods have had shortcomings, namey, the genomic region of the QTL detected, within which there were probably hundreds of candidate genes was still too large. In this paper, a better understanding of the molecular functions of QTLs was obtained by first briefly reviewing methods of analyzing the candidate gene within QTL intervals based on bioinformatics. Then, in order to provide a new analytical method for better use of QTLs in the future, the genetics, genome organization, gene expression and function of candidate genes located on QTL region were analyzed.
  • [1] YANG Shengqiu, WANG Shaojun, XIA Jiahui, LI Rui, LUO Shuang, LAN Mengjie, GUO Xiaofei, XIE Lingling, WANG Zhengjun, XIAO Bo, GUO Zhipeng, ZHANG Ye.  Biotic and abiotic mechanisms of the impact of forest restoration on soil N2O emissions . Journal of Zhejiang A&F University, 2025, 42(2): 410-421. doi: 10.11833/j.issn.2095-0756.20240375
    [2] SHEN Danwei, ZHU Ting, LI Meixin, JIANG Jingyong, SHI Yujie, LI Xiaobai, ZENG Wei, CHEN Zhen.  Genome-wide identification of the polygalacturonase gene family in Rubus chingii and its roles in fruit development . Journal of Zhejiang A&F University, 2025, 42(2): 249-260. doi: 10.11833/j.issn.2095-0756.20240427
    [3] LIU Jun, LI Long, CHEN Yulong, LIU Yan, WU Yaosong, REN Shanshan.  Genome-wide identification, system evolution and expression pattern analysis of CONSTANS-like in Eucommia ulmoides . Journal of Zhejiang A&F University, 2022, 39(3): 475-485. doi: 10.11833/j.issn.2095-0756.20210385
    [4] JIANG Zhengqin, ZHOU Mingbing, ZHENG Hao, JI Hang, XU Zhixin.  Cloning and characterization of a long terminal repeat retrotransposon (Phyllostachys edulis retrotransposon 7) in Phyllostachys edulis . Journal of Zhejiang A&F University, 2019, 36(5): 917-927. doi: 10.11833/j.issn.2095-0756.2019.05.010
    [5] TONG Liang, LI Pingheng, ZHOU Guomo, ZHOU Yufeng, LI Chong.  A review of research about rhizome-root system in bamboo forest . Journal of Zhejiang A&F University, 2019, 36(1): 183-192. doi: 10.11833/j.issn.2095-0756.2019.01.023
    [6] ZHANG Jie, YIN Dejie, GUAN Haiyan, QU Qiqi, DONG Li.  An overview of Sedum spp. Research . Journal of Zhejiang A&F University, 2018, 35(6): 1166-1176. doi: 10.11833/j.issn.2095-0756.2018.06.022
    [7] MAO Wei, CAO Yuefen.  Genetic characteristics and research advances of genes related to cotton fiber development . Journal of Zhejiang A&F University, 2018, 35(6): 1155-1165. doi: 10.11833/j.issn.2095-0756.2018.06.021
    [8] LIU Yanyan, ZHU Fangming, LIU Xiaozhen, ZHANG Hanyao.  Cloning and analysis of the CHS gene from a tissue culture of a red mutant strain in Vaccinium ashei . Journal of Zhejiang A&F University, 2017, 34(5): 864-870. doi: 10.11833/j.issn.2095-0756.2017.05.013
    [9] WU Xue, DU Changxia, YANG Bingbing, FAN Huaifu.  Research progress in plant aquaporins . Journal of Zhejiang A&F University, 2015, 32(5): 789-796. doi: 10.11833/j.issn.2095-0756.2015.05.020
    [10] ZHANG Tao, LI Yongfu, JIANG Peikun, ZHOU Guomo, LIU Juan.  Research progresses in the effect of land-use change on soil carbon pools and soil respiration . Journal of Zhejiang A&F University, 2013, 30(3): 428-437. doi: 10.11833/j.issn.2095-0756.2013.03.021
    [11] FU Jianguo, LIU Jinliang, YANG Xiaojun, AN Yulin, LUO Jiayan.  A review of wood identification based on molecular biology technologies . Journal of Zhejiang A&F University, 2013, 30(3): 438-443. doi: 10.11833/j.issn.2095-0756.2013.03.022
    [12] XU Chen-lu, ZHANG Shou-gong, SUN Xiao-mei.  Conifer genomic resources and its applications in conifer genetics breeding . Journal of Zhejiang A&F University, 2012, 29(5): 768-777. doi: 10.11833/j.issn.2095-0756.2012.05.021
    [13] HE Yong-qing, FANG Jia, YU Min-fen, FANG Zhong-xiang, JIANG Bo, PAN Yin-hui, ZHENG Bing-song.  Advances in molecular biology for plasma membrane intrinsic proteins （PIPs）：a review . Journal of Zhejiang A&F University, 2012, 29(3): 446-452. doi: 10.11833/j.issn.2095-0756.2012.03.020
    [14] MA Jin, LIU Zhi-gao, ZHENG Gang.  Differential proteomics and its application in plant salt stress . Journal of Zhejiang A&F University, 2011, 28(1): 139-143. doi: 10.11833/j.issn.2095-0756.2011.01.022
    [15] ZHANG Hui-ling, SONG Xin-zhang, AI Jian-guo, JIANG Hong, YU Shu-quan.  A review of UV-B radiation and its influence on litter decomposition . Journal of Zhejiang A&F University, 2010, 27(1): 134-142. doi: 10.11833/j.issn.2095-0756.2010.01.022
    [16] KONG Hong, CHENG Fang-yun.  Cytological and molecular biological evidence for taxonomic revision of Paeonia delavayi . Journal of Zhejiang A&F University, 2010, 27(4): 601-605. doi: 10.11833/j.issn.2095-0756.2010.04.021
    [17] WANG Hang-jun, ZHANG Guang-qun, QI Heng-nian, LI Wen-zhu.  A review of research on wood recognition technology . Journal of Zhejiang A&F University, 2009, 26(6): 896-902.
    [18] GONG Zhi-wen, KANG Xin-gang, GU Li, ZHAO Jun-hui, ZHENG Yan-feng, YANG Hua.  Research methods on natural forest stand structure：a review . Journal of Zhejiang A&F University, 2009, 26(3): 434-443.
    [19] DING Hong, JIN Yong-huan, CUI Jian-guo, ZHAO Lin-sen, PIAO Zheng-Ji.  Review on ranges of ecological road-effect zones . Journal of Zhejiang A&F University, 2008, 25(6): 810-816.
    [20] DAI Jian-bing, YU Yi-wu, CAO Qun.  Summary of research on wetland protection and management . Journal of Zhejiang A&F University, 2006, 23(3): 328-333.
  • Created with Highcharts 5.0.7Amount of accessChart context menuAbstract Views, HTML Views, PDF Downloads StatisticsAbstract ViewsHTML ViewsPDF Downloads2024-052024-062024-072024-082024-092024-102024-112024-122025-012025-022025-032025-040Highcharts.com
    Created with Highcharts 5.0.7Chart context menuAccess Class DistributionFULLTEXT: 18.9 %FULLTEXT: 18.9 %META: 77.0 %META: 77.0 %PDF: 4.2 %PDF: 4.2 %FULLTEXTMETAPDFHighcharts.com
    Created with Highcharts 5.0.7Chart context menuAccess Area Distribution其他: 9.5 %其他: 9.5 %其他: 0.2 %其他: 0.2 %Central District: 0.0 %Central District: 0.0 %China: 0.5 %China: 0.5 %Girard: 0.0 %Girard: 0.0 %Halfweg: 0.2 %Halfweg: 0.2 %San Jose: 0.0 %San Jose: 0.0 %Taiwan, China: 0.0 %Taiwan, China: 0.0 %[]: 0.2 %[]: 0.2 %三亚: 0.3 %三亚: 0.3 %上海: 1.6 %上海: 1.6 %东京: 0.1 %东京: 0.1 %东莞: 0.2 %东莞: 0.2 %乌鲁木齐: 0.2 %乌鲁木齐: 0.2 %佛山: 0.0 %佛山: 0.0 %保定: 0.1 %保定: 0.1 %儋州: 0.3 %儋州: 0.3 %兰州: 0.2 %兰州: 0.2 %北京: 21.4 %北京: 21.4 %十堰: 0.0 %十堰: 0.0 %南京: 0.7 %南京: 0.7 %南宁: 0.2 %南宁: 0.2 %南平: 0.2 %南平: 0.2 %南昌: 0.1 %南昌: 0.1 %南阳: 0.0 %南阳: 0.0 %厦门: 0.1 %厦门: 0.1 %台州: 0.0 %台州: 0.0 %合肥: 0.3 %合肥: 0.3 %吕贝克: 0.0 %吕贝克: 0.0 %呼和浩特: 0.4 %呼和浩特: 0.4 %咸阳: 0.4 %咸阳: 0.4 %哈尔滨: 0.1 %哈尔滨: 0.1 %哥伦布: 0.0 %哥伦布: 0.0 %嘉兴: 0.0 %嘉兴: 0.0 %夏延: 0.0 %夏延: 0.0 %天津: 0.3 %天津: 0.3 %宁波: 0.1 %宁波: 0.1 %宣城: 0.2 %宣城: 0.2 %巴音郭楞: 0.3 %巴音郭楞: 0.3 %常州: 0.0 %常州: 0.0 %广州: 1.9 %广州: 1.9 %廊坊: 0.0 %廊坊: 0.0 %开封: 0.1 %开封: 0.1 %张家口: 1.2 %张家口: 1.2 %悉尼: 0.0 %悉尼: 0.0 %意法半: 0.0 %意法半: 0.0 %成都: 0.4 %成都: 0.4 %扬州: 0.2 %扬州: 0.2 %承德: 0.3 %承德: 0.3 %新乡: 0.1 %新乡: 0.1 %新加坡: 0.0 %新加坡: 0.0 %新疆乌鲁木齐: 0.0 %新疆乌鲁木齐: 0.0 %新竹: 0.0 %新竹: 0.0 %昆明: 0.3 %昆明: 0.3 %昌吉: 0.0 %昌吉: 0.0 %晋中: 0.4 %晋中: 0.4 %朝阳: 0.1 %朝阳: 0.1 %杭州: 1.0 %杭州: 1.0 %格兰特县: 0.3 %格兰特县: 0.3 %格兰茨帕斯: 0.1 %格兰茨帕斯: 0.1 %桂林: 0.1 %桂林: 0.1 %武汉: 1.2 %武汉: 1.2 %汕头: 0.2 %汕头: 0.2 %沈阳: 0.0 %沈阳: 0.0 %河源: 0.0 %河源: 0.0 %泰安: 0.0 %泰安: 0.0 %洛桑: 0.0 %洛桑: 0.0 %济南: 0.1 %济南: 0.1 %海口: 0.2 %海口: 0.2 %淮安: 0.3 %淮安: 0.3 %深圳: 0.3 %深圳: 0.3 %温州: 0.1 %温州: 0.1 %湖州: 0.0 %湖州: 0.0 %湛江: 0.2 %湛江: 0.2 %漯河: 0.1 %漯河: 0.1 %漳州: 0.0 %漳州: 0.0 %潍坊: 0.1 %潍坊: 0.1 %烟台: 0.1 %烟台: 0.1 %牡丹江: 0.0 %牡丹江: 0.0 %石家庄: 0.5 %石家庄: 0.5 %福州: 0.5 %福州: 0.5 %绍兴: 0.1 %绍兴: 0.1 %绵阳: 0.0 %绵阳: 0.0 %自贡: 0.0 %自贡: 0.0 %芒廷维尤: 16.6 %芒廷维尤: 16.6 %芝加哥: 1.9 %芝加哥: 1.9 %苏州: 0.1 %苏州: 0.1 %菏泽: 0.0 %菏泽: 0.0 %衡阳: 0.0 %衡阳: 0.0 %衢州: 0.0 %衢州: 0.0 %西宁: 27.2 %西宁: 27.2 %西安: 0.0 %西安: 0.0 %贵阳: 0.4 %贵阳: 0.4 %通辽: 0.0 %通辽: 0.0 %郑州: 1.1 %郑州: 1.1 %重庆: 0.1 %重庆: 0.1 %金昌: 0.0 %金昌: 0.0 %长春: 0.0 %长春: 0.0 %长沙: 1.7 %长沙: 1.7 %阳泉: 0.0 %阳泉: 0.0 %雅安: 0.0 %雅安: 0.0 %青岛: 0.2 %青岛: 0.2 %香港特别行政区: 0.0 %香港特别行政区: 0.0 %麦迪逊: 0.1 %麦迪逊: 0.1 %其他其他Central DistrictChinaGirardHalfwegSan JoseTaiwan, China[]三亚上海东京东莞乌鲁木齐佛山保定儋州兰州北京十堰南京南宁南平南昌南阳厦门台州合肥吕贝克呼和浩特咸阳哈尔滨哥伦布嘉兴夏延天津宁波宣城巴音郭楞常州广州廊坊开封张家口悉尼意法半成都扬州承德新乡新加坡新疆乌鲁木齐新竹昆明昌吉晋中朝阳杭州格兰特县格兰茨帕斯桂林武汉汕头沈阳河源泰安洛桑济南海口淮安深圳温州湖州湛江漯河漳州潍坊烟台牡丹江石家庄福州绍兴绵阳自贡芒廷维尤芝加哥苏州菏泽衡阳衢州西宁西安贵阳通辽郑州重庆金昌长春长沙阳泉雅安青岛香港特别行政区麦迪逊Highcharts.com

  • Cited by

    Periodical cited type(6)

    1. 祝洋，刘志应，李新苗，王楠，张娟. 水肥耦合效应对设施番茄生长及水分利用效率的影响. 山东农业科学. 2024(04): 92-101 .
    2. 王沛然，张家林，高祥斌，涂佳才. 水肥耦合对‘聊红’椿幼苗生长特性的影响. 山东农业大学学报(自然科学版). 2024(02): 153-161 .
    3. 周陈平，林伟，杨敏，邝瑞彬，吴夏明，郭金菊，黄炳雄，魏岳荣. 水肥耦合对香蕉和番木瓜幼苗生长的影响. 中国农学通报. 2024(10): 68-75 .
    4. 张晓姗，高嘉，王洪永，王霞，庞薇，陈寅，杜振宇，马风云，马丙尧. 我国栎树引种及其营养生长研究进展. 江苏林业科技. 2024(02): 48-52 .
    5. 李潘亭，杜满义，王玥，裴顺祥，辛学兵. 元宝枫幼苗生长及光合特性对水肥耦合的响应. 南京林业大学学报(自然科学版). 2024(05): 113-122 .
    6. 廖欢，甘浩天，刘凯，殷星，刘少华，唐新愿，侯振安. 机采棉氮素吸收及产量的最佳水氮组合. 植物营养与肥料学报. 2021(12): 2229-2242 .

    Other cited types(13)

通讯作者: 陈斌, bchen63@163.com
  • 1. 

    沈阳化工大学材料科学与工程学院 沈阳 110142

  1. 本站搜索
  2. 百度学术搜索
  3. 万方数据库搜索
  4. CNKI搜索
Get Citation
PDF
XML

Article views(2278) PDF downloads(188) Cited by(19)

Related
Proportional views

Methods of bioinformatic analysis for candidate genes underlying quantitative trait loci(QTLs)

  • 1. School of Forestry and Biotechnology, Zhejiang Forestry College, Lin'an 311300, Zhejiang, China;
  • 2. Bioinformatics Institute, Zhejiang University, Hangzhou 310029, Zhejiang, China
  • Received Date: 2007-04-20
  • Rev Recd Date: 2007-09-20
  • Publish Date: 2008-02-10

Abstract: Almost all crops have been studied on QTL(quantitative trait loci) mapping with many QTL mapping methods, such as IM(interval mapping), CIM(composite interval mapping), MCIM(mixed-model based composite interval mapping) and Bayesian QTL mapping having been developed. However, these methods have had shortcomings, namey, the genomic region of the QTL detected, within which there were probably hundreds of candidate genes was still too large. In this paper, a better understanding of the molecular functions of QTLs was obtained by first briefly reviewing methods of analyzing the candidate gene within QTL intervals based on bioinformatics. Then, in order to provide a new analytical method for better use of QTLs in the future, the genetics, genome organization, gene expression and function of candidate genes located on QTL region were analyzed.

JU Jiao, LI Yingchao, WANG Libing, et al. Coupling effects of soil water and fertilizer application on the growth of Quercus variabilis seedlings[J]. Journal of Zhejiang A&F University, 2020, 37(4): 673-682. DOI: 10.11833/j.issn.2095-0756.20190456
Citation: WU Jia-sheng, WANG Xu-sheng. Methods of bioinformatic analysis for candidate genes underlying quantitative trait loci(QTLs)[J]. Journal of Zhejiang A&F University, 2008, 25(1): 104-108.
shu

    HTML

Catalog

  • HTML

浙ICP备11046845号

Copyright by 2019 Editorial Department of Journal of Zhejiang A&F University

Address: No. 666, Wu Su street, Ling'an District, Hangzhou, ZhejiangPost Code: 311300Tel: 0571-63732749

E-Mail: :zlxb@zafu.edu.cn

Supported by: Beijing Renhe Information Technology Co. Ltd  support: info@rhhz.net

/

DownLoad:  Full-Size Img  PowerPoint
Return
Return